490 lines
22 KiB
Python
490 lines
22 KiB
Python
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#!/usr/bin/env python3
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"""
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高效版TTA-E参数搜索
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先缓存所有基础预测，然后快速搜索参数组合
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"""
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import os
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import sys
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import torch
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import numpy as np
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import pandas as pd
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from omegaconf import OmegaConf
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import time
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from tqdm import tqdm
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import editdistance
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import argparse
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import itertools
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import json
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import pickle
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from concurrent.futures import ThreadPoolExecutor, as_completed
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# GPU加速库
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try:
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import cupy as cp
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GPU_AVAILABLE = True
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print("✅ CuPy available - GPU acceleration enabled")
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# 定义转换函数
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def to_cpu(arr):
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return cp.asnumpy(arr) if hasattr(arr, 'device') else arr
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except ImportError:
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print("⚠️ CuPy not available - falling back to CPU numpy")
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import numpy as cp
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GPU_AVAILABLE = False
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# 定义转换函数
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def to_cpu(arr):
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return arr
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# Add parent directories to path to import models
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sys.path.append(os.path.join(os.path.dirname(__file__), '..', 'model_training'))
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sys.path.append(os.path.join(os.path.dirname(__file__), '..', 'model_training_lstm'))
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from model_training.rnn_model import GRUDecoder
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from model_training_lstm.rnn_model import LSTMDecoder
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from model_training.evaluate_model_helpers import *
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from model_training.evaluate_model_helpers import LOGIT_TO_PHONEME
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def parse_arguments():
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parser = argparse.ArgumentParser(description='高效TTA-E参数搜索')
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# 模型和数据路径
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parser.add_argument('--gru_model_path', type=str, default='/root/autodl-tmp/nejm-brain-to-text/data/t15_pretrained_rnn_baseline')
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parser.add_argument('--lstm_model_path', type=str, default='/root/autodl-tmp/nejm-brain-to-text/model_training_lstm/trained_models/baseline_rnn')
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parser.add_argument('--data_dir', type=str, default='../data/hdf5_data_final')
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parser.add_argument('--csv_path', type=str, default='../data/t15_copyTaskData_description.csv')
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parser.add_argument('--eval_type', type=str, default='val', choices=['val', 'test'])
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parser.add_argument('--gpu_number', type=int, default=0)
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# 搜索空间
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parser.add_argument('--gru_weights', type=str, default='0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0')
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parser.add_argument('--tta_noise_weights', type=str, default='0.0,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0')
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parser.add_argument('--tta_scale_weights', type=str, default='0.0,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0')
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parser.add_argument('--tta_shift_weights', type=str, default='0.0,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0')
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parser.add_argument('--tta_smooth_weights', type=str, default='0.0,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0')
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# TTA参数
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parser.add_argument('--tta_noise_std', type=float, default=0.01)
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parser.add_argument('--tta_smooth_range', type=float, default=0.5)
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parser.add_argument('--tta_scale_range', type=float, default=0.05)
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parser.add_argument('--tta_cut_max', type=int, default=3)
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# 缓存控制
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parser.add_argument('--cache_file', type=str, default='tta_cache.pkl')
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parser.add_argument('--force_recache', action='store_true')
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parser.add_argument('--output_file', type=str, default='search_results.json')
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# 并行处理
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parser.add_argument('--max_workers', type=int, default=25, help='最大并行工作线程数')
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parser.add_argument('--batch_size', type=int, default=100, help='每批处理的配置数量')
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return parser.parse_args()
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def generate_base_predictions(args):
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"""生成所有基础增强的预测结果"""
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print("🔄 生成基础预测缓存...")
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# 设置设备
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if torch.cuda.is_available() and args.gpu_number >= 0:
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device = torch.device(f'cuda:{args.gpu_number}')
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else:
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device = torch.device('cpu')
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# 加载模型
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gru_model_args = OmegaConf.load(os.path.join(args.gru_model_path, 'checkpoint/args.yaml'))
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lstm_model_args = OmegaConf.load(os.path.join(args.lstm_model_path, 'checkpoint/args.yaml'))
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gru_model = GRUDecoder(
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neural_dim=gru_model_args['model']['n_input_features'],
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n_units=gru_model_args['model']['n_units'],
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n_days=len(gru_model_args['dataset']['sessions']),
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n_classes=gru_model_args['dataset']['n_classes'],
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rnn_dropout=gru_model_args['model']['rnn_dropout'],
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input_dropout=gru_model_args['model']['input_network']['input_layer_dropout'],
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n_layers=gru_model_args['model']['n_layers'],
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patch_size=gru_model_args['model']['patch_size'],
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patch_stride=gru_model_args['model']['patch_stride'],
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)
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lstm_model = LSTMDecoder(
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neural_dim=lstm_model_args['model']['n_input_features'],
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n_units=lstm_model_args['model']['n_units'],
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n_days=len(lstm_model_args['dataset']['sessions']),
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n_classes=lstm_model_args['dataset']['n_classes'],
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rnn_dropout=lstm_model_args['model']['rnn_dropout'],
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input_dropout=lstm_model_args['model']['input_network']['input_layer_dropout'],
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n_layers=lstm_model_args['model']['n_layers'],
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patch_size=lstm_model_args['model']['patch_size'],
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patch_stride=lstm_model_args['model']['patch_stride'],
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)
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# 加载权重
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gru_checkpoint = torch.load(os.path.join(args.gru_model_path, 'checkpoint/best_checkpoint'),
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weights_only=False, map_location=device)
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lstm_checkpoint = torch.load(os.path.join(args.lstm_model_path, 'checkpoint/best_checkpoint'),
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weights_only=False, map_location=device)
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# 清理键名
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for checkpoint in [gru_checkpoint, lstm_checkpoint]:
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for key in list(checkpoint['model_state_dict'].keys()):
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checkpoint['model_state_dict'][key.replace("module.", "")] = checkpoint['model_state_dict'].pop(key)
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checkpoint['model_state_dict'][key.replace("_orig_mod.", "")] = checkpoint['model_state_dict'].pop(key)
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gru_model.load_state_dict(gru_checkpoint['model_state_dict'])
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lstm_model.load_state_dict(lstm_checkpoint['model_state_dict'])
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gru_model.to(device)
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lstm_model.to(device)
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gru_model.eval()
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lstm_model.eval()
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# 加载数据
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b2txt_csv_df = pd.read_csv(args.csv_path)
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test_data = {}
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total_trials = 0
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for session in gru_model_args['dataset']['sessions']:
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files = [f for f in os.listdir(os.path.join(args.data_dir, session)) if f.endswith('.hdf5')]
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if f'data_{args.eval_type}.hdf5' in files:
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eval_file = os.path.join(args.data_dir, session, f'data_{args.eval_type}.hdf5')
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data = load_h5py_file(eval_file, b2txt_csv_df)
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test_data[session] = data
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total_trials += len(test_data[session]["neural_features"])
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print(f"总试验数: {total_trials}")
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# 生成所有基础增强类型的预测
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augmentation_types = ['original', 'noise', 'scale', 'shift', 'smooth']
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cache = {}
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for aug_type in augmentation_types:
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print(f"处理增强类型: {aug_type}")
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cache[aug_type] = {}
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with tqdm(total=total_trials, desc=f'{aug_type}', unit='trial') as pbar:
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for session, data in test_data.items():
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input_layer = gru_model_args['dataset']['sessions'].index(session)
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cache[aug_type][session] = []
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for trial in range(len(data['neural_features'])):
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neural_input = data['neural_features'][trial]
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neural_input = np.expand_dims(neural_input, axis=0)
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neural_input = torch.tensor(neural_input, device=device, dtype=torch.bfloat16)
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# 应用增强
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x_aug = neural_input.clone()
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if aug_type == 'noise':
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noise_scale = args.tta_noise_std * (0.5 + 0.5 * np.random.rand())
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x_aug = x_aug + torch.randn_like(x_aug) * noise_scale
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elif aug_type == 'scale':
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scale_factor = 1.0 + (torch.rand(1).item() - 0.5) * 2 * args.tta_scale_range
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x_aug = x_aug * scale_factor
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elif aug_type == 'shift' and args.tta_cut_max > 0:
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shift_amount = np.random.randint(1, min(args.tta_cut_max + 1, x_aug.shape[1] // 8))
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x_aug = torch.cat([x_aug[:, shift_amount:, :], x_aug[:, :shift_amount, :]], dim=1)
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elif aug_type == 'smooth':
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smooth_variation = (torch.rand(1).item() - 0.5) * 2 * args.tta_smooth_range
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varied_smooth_std = max(0.3, gru_model_args['dataset']['data_transforms']['smooth_kernel_std'] + smooth_variation)
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# 应用高斯平滑
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with torch.autocast(device_type="cuda", enabled=gru_model_args['use_amp'], dtype=torch.bfloat16):
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if aug_type == 'smooth':
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x_smoothed = gauss_smooth(
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inputs=x_aug, device=device,
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smooth_kernel_std=varied_smooth_std,
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smooth_kernel_size=gru_model_args['dataset']['data_transforms']['smooth_kernel_size'],
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padding='valid',
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)
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else:
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x_smoothed = gauss_smooth(
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inputs=x_aug, device=device,
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smooth_kernel_std=gru_model_args['dataset']['data_transforms']['smooth_kernel_std'],
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smooth_kernel_size=gru_model_args['dataset']['data_transforms']['smooth_kernel_size'],
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padding='valid',
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)
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with torch.no_grad():
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gru_logits, _ = gru_model(x=x_smoothed, day_idx=torch.tensor([input_layer], device=device), states=None, return_state=True)
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lstm_logits, _ = lstm_model(x=x_smoothed, day_idx=torch.tensor([input_layer], device=device), states=None, return_state=True)
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gru_probs = torch.softmax(gru_logits, dim=-1).float().cpu().numpy()
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lstm_probs = torch.softmax(lstm_logits, dim=-1).float().cpu().numpy()
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# 保存预测和真实标签信息
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trial_data = {
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'gru_probs': gru_probs,
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'lstm_probs': lstm_probs,
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'trial_info': {
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'session': session,
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'block_num': data['block_num'][trial],
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'trial_num': data['trial_num'][trial],
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}
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}
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if args.eval_type == 'val':
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trial_data['trial_info'].update({
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'seq_class_ids': data['seq_class_ids'][trial],
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'seq_len': data['seq_len'][trial],
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'sentence_label': data['sentence_label'][trial],
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})
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cache[aug_type][session].append(trial_data)
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pbar.update(1)
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# 保存缓存
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with open(args.cache_file, 'wb') as f:
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pickle.dump(cache, f)
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print(f"✅ 缓存已保存到 {args.cache_file}")
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return cache
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def evaluate_config(cache, gru_weight, tta_weights, eval_type='val'):
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"""评估特定参数配置 - GPU加速版本"""
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lstm_weight = 1.0 - gru_weight
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epsilon = 1e-8
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total_edit_distance = 0
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total_true_length = 0
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# 归一化TTA权重
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enabled_augmentations = [k for k, v in tta_weights.items() if v > 0]
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if len(enabled_augmentations) == 0:
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return float('inf')
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total_tta_weight = sum(tta_weights[k] for k in enabled_augmentations)
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norm_tta_weights = {k: tta_weights[k]/total_tta_weight for k in enabled_augmentations}
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# 遍历所有试验
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for session in cache['original'].keys():
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for trial_idx in range(len(cache['original'][session])):
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trial_info = cache['original'][session][trial_idx]['trial_info']
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if eval_type == 'val' and 'seq_class_ids' not in trial_info:
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continue
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# 集成所有启用的增强 - 使用GPU加速
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weighted_gru_probs = None
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weighted_lstm_probs = None
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for aug_type in enabled_augmentations:
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weight = norm_tta_weights[aug_type]
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# 使用GPU数组进行计算
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if GPU_AVAILABLE:
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gru_probs = cp.asarray(cache[aug_type][session][trial_idx]['gru_probs'])
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lstm_probs = cp.asarray(cache[aug_type][session][trial_idx]['lstm_probs'])
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else:
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gru_probs = cache[aug_type][session][trial_idx]['gru_probs']
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lstm_probs = cache[aug_type][session][trial_idx]['lstm_probs']
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if weighted_gru_probs is None:
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weighted_gru_probs = weight * gru_probs
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weighted_lstm_probs = weight * lstm_probs
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else:
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# 处理长度不同的情况
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min_len = min(weighted_gru_probs.shape[1], gru_probs.shape[1])
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weighted_gru_probs = weighted_gru_probs[:, :min_len, :] + weight * gru_probs[:, :min_len, :]
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weighted_lstm_probs = weighted_lstm_probs[:, :min_len, :] + weight * lstm_probs[:, :min_len, :]
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# GRU+LSTM集成 - GPU加速的log空间计算
|
|||
|
|
weighted_gru_probs = weighted_gru_probs + epsilon
|
|||
|
|
weighted_lstm_probs = weighted_lstm_probs + epsilon
|
|||
|
|
|
|||
|
|
if GPU_AVAILABLE:
|
|||
|
|
log_ensemble_probs = (gru_weight * cp.log(weighted_gru_probs) +
|
|||
|
|
lstm_weight * cp.log(weighted_lstm_probs))
|
|||
|
|
ensemble_probs = cp.exp(log_ensemble_probs)
|
|||
|
|
ensemble_probs = ensemble_probs / ensemble_probs.sum(axis=-1, keepdims=True)
|
|||
|
|
|
|||
|
|
# 解码 - GPU加速的argmax
|
|||
|
|
pred_seq = cp.argmax(ensemble_probs[0], axis=-1)
|
|||
|
|
pred_seq = to_cpu(pred_seq) # 转回CPU进行后续处理
|
|||
|
|
else:
|
|||
|
|
log_ensemble_probs = (gru_weight * np.log(weighted_gru_probs) +
|
|||
|
|
lstm_weight * np.log(weighted_lstm_probs))
|
|||
|
|
ensemble_probs = np.exp(log_ensemble_probs)
|
|||
|
|
ensemble_probs = ensemble_probs / ensemble_probs.sum(axis=-1, keepdims=True)
|
|||
|
|
|
|||
|
|
# 解码
|
|||
|
|
pred_seq = np.argmax(ensemble_probs[0], axis=-1)
|
|||
|
|
|
|||
|
|
# 后处理（在CPU上进行，因为涉及Python列表操作）
|
|||
|
|
pred_seq = [int(p) for p in pred_seq if p != 0]
|
|||
|
|
pred_seq = [pred_seq[i] for i in range(len(pred_seq)) if i == 0 or pred_seq[i] != pred_seq[i-1]]
|
|||
|
|
pred_phonemes = [LOGIT_TO_PHONEME[p] for p in pred_seq]
|
|||
|
|
|
|||
|
|
if eval_type == 'val':
|
|||
|
|
true_seq = trial_info['seq_class_ids'][0:trial_info['seq_len']]
|
|||
|
|
true_phonemes = [LOGIT_TO_PHONEME[p] for p in true_seq]
|
|||
|
|
|
|||
|
|
ed = editdistance.eval(true_phonemes, pred_phonemes)
|
|||
|
|
total_edit_distance += ed
|
|||
|
|
total_true_length += len(true_phonemes)
|
|||
|
|
|
|||
|
|
if eval_type == 'val' and total_true_length > 0:
|
|||
|
|
return 100 * total_edit_distance / total_true_length
|
|||
|
|
return 0.0
|
|||
|
|
|
|||
|
|
def evaluate_config_wrapper(args_tuple):
|
|||
|
|
"""包装函数用于多线程处理"""
|
|||
|
|
cache, gru_weight, tta_weights, eval_type = args_tuple
|
|||
|
|
per = evaluate_config(cache, gru_weight, tta_weights, eval_type)
|
|||
|
|
|
|||
|
|
return {
|
|||
|
|
'gru_weight': gru_weight,
|
|||
|
|
'lstm_weight': 1.0 - gru_weight,
|
|||
|
|
'tta_weights': tta_weights.copy(),
|
|||
|
|
'per': per
|
|||
|
|
}
|
|||
|
|
|
|||
|
|
def search_parameters(cache, args):
|
|||
|
|
"""搜索最优参数"""
|
|||
|
|
print("🔍 开始参数搜索...")
|
|||
|
|
|
|||
|
|
# 解析搜索空间
|
|||
|
|
gru_weights = [float(x) for x in args.gru_weights.split(',')]
|
|||
|
|
noise_weights = [float(x) for x in args.tta_noise_weights.split(',')]
|
|||
|
|
scale_weights = [float(x) for x in args.tta_scale_weights.split(',')]
|
|||
|
|
shift_weights = [float(x) for x in args.tta_shift_weights.split(',')]
|
|||
|
|
smooth_weights = [float(x) for x in args.tta_smooth_weights.split(',')]
|
|||
|
|
|
|||
|
|
# 生成所有配置组合
|
|||
|
|
configs = []
|
|||
|
|
for gru_w in gru_weights:
|
|||
|
|
for noise_w in noise_weights:
|
|||
|
|
for scale_w in scale_weights:
|
|||
|
|
for shift_w in shift_weights:
|
|||
|
|
for smooth_w in smooth_weights:
|
|||
|
|
tta_weights = {
|
|||
|
|
'original': 1.0, # 总是包含原始数据
|
|||
|
|
'noise': noise_w,
|
|||
|
|
'scale': scale_w,
|
|||
|
|
'shift': shift_w,
|
|||
|
|
'smooth': smooth_w
|
|||
|
|
}
|
|||
|
|
configs.append((cache, gru_w, tta_weights, args.eval_type))
|
|||
|
|
|
|||
|
|
total_configs = len(configs)
|
|||
|
|
print(f"搜索空间: {total_configs} 个配置")
|
|||
|
|
print(f"使用 {args.max_workers} 个线程并行处理...")
|
|||
|
|
|
|||
|
|
best_per = float('inf')
|
|||
|
|
best_config = None
|
|||
|
|
all_results = []
|
|||
|
|
completed_count = 0
|
|||
|
|
|
|||
|
|
# 使用线程池并行处理
|
|||
|
|
with ThreadPoolExecutor(max_workers=args.max_workers) as executor:
|
|||
|
|
# 提交所有任务
|
|||
|
|
future_to_config = {
|
|||
|
|
executor.submit(evaluate_config_wrapper, config): config
|
|||
|
|
for config in configs
|
|||
|
|
}
|
|||
|
|
|
|||
|
|
# 处理完成的任务
|
|||
|
|
for future in as_completed(future_to_config):
|
|||
|
|
try:
|
|||
|
|
result = future.result()
|
|||
|
|
all_results.append(result)
|
|||
|
|
completed_count += 1
|
|||
|
|
|
|||
|
|
# 更新最佳结果
|
|||
|
|
if result['per'] < best_per:
|
|||
|
|
best_per = result['per']
|
|||
|
|
best_config = result
|
|||
|
|
tw = result['tta_weights']
|
|||
|
|
print(f"🎯 新最佳[{completed_count}/{total_configs}]: PER={best_per:.3f}% | "
|
|||
|
|
f"GRU={result['gru_weight']:.1f} | "
|
|||
|
|
f"TTA=({tw['noise']:.1f},{tw['scale']:.1f},{tw['shift']:.1f},{tw['smooth']:.1f})")
|
|||
|
|
|
|||
|
|
# 定期进度报告
|
|||
|
|
if completed_count % args.batch_size == 0:
|
|||
|
|
progress = 100 * completed_count / total_configs
|
|||
|
|
print(f"📊 进度: {completed_count}/{total_configs} ({progress:.1f}%) | 当前最优PER: {best_per:.3f}%")
|
|||
|
|
elif completed_count % 50 == 0: # 更频繁的简单进度
|
|||
|
|
print(f"... {completed_count}/{total_configs} ...", end='', flush=True)
|
|||
|
|
|
|||
|
|
except Exception as e:
|
|||
|
|
completed_count += 1
|
|||
|
|
config = future_to_config[future]
|
|||
|
|
print(f"❌ 配置失败: {config[1]:.1f}, 错误: {e}")
|
|||
|
|
# 添加失败的结果记录
|
|||
|
|
all_results.append({
|
|||
|
|
'gru_weight': config[1],
|
|||
|
|
'lstm_weight': 1.0 - config[1],
|
|||
|
|
'tta_weights': config[2],
|
|||
|
|
'per': float('inf'),
|
|||
|
|
'error': str(e)
|
|||
|
|
})
|
|||
|
|
|
|||
|
|
print(f"\n✅ 所有任务完成!")
|
|||
|
|
|
|||
|
|
# 找到真正的最佳结果（防止异常情况）
|
|||
|
|
valid_results = [r for r in all_results if 'error' not in r and r['per'] != float('inf')]
|
|||
|
|
if valid_results:
|
|||
|
|
best_config = min(valid_results, key=lambda x: x['per'])
|
|||
|
|
|
|||
|
|
return all_results, best_config
|
|||
|
|
|
|||
|
|
def main():
|
|||
|
|
args = parse_arguments()
|
|||
|
|
|
|||
|
|
print("🚀 高效TTA-E参数搜索")
|
|||
|
|
print("=" * 50)
|
|||
|
|
|
|||
|
|
# 第一阶段：生成或加载缓存
|
|||
|
|
if args.force_recache or not os.path.exists(args.cache_file):
|
|||
|
|
cache = generate_base_predictions(args)
|
|||
|
|
else:
|
|||
|
|
print(f"📁 加载现有缓存: {args.cache_file}")
|
|||
|
|
with open(args.cache_file, 'rb') as f:
|
|||
|
|
cache = pickle.load(f)
|
|||
|
|
print("✅ 缓存加载完成")
|
|||
|
|
|
|||
|
|
# 第二阶段：参数搜索
|
|||
|
|
all_results, best_config = search_parameters(cache, args)
|
|||
|
|
|
|||
|
|
# 保存结果
|
|||
|
|
results = {
|
|||
|
|
'best_config': best_config,
|
|||
|
|
'all_results': all_results,
|
|||
|
|
'args': vars(args),
|
|||
|
|
'timestamp': time.strftime("%Y-%m-%d %H:%M:%S")
|
|||
|
|
}
|
|||
|
|
|
|||
|
|
with open(args.output_file, 'w') as f:
|
|||
|
|
json.dump(results, f, indent=2)
|
|||
|
|
|
|||
|
|
print("\n" + "=" * 50)
|
|||
|
|
print("🏆 搜索完成!")
|
|||
|
|
|
|||
|
|
if best_config is not None:
|
|||
|
|
print(f"最佳配置: PER={best_config['per']:.3f}%")
|
|||
|
|
print(f"GRU权重: {best_config['gru_weight']:.1f}")
|
|||
|
|
print(f"TTA权重: {best_config['tta_weights']}")
|
|||
|
|
print(f"结果保存到: {args.output_file}")
|
|||
|
|
|
|||
|
|
# 显示top-10
|
|||
|
|
sorted_results = sorted([r for r in all_results if 'error' not in r and r['per'] != float('inf')],
|
|||
|
|
key=lambda x: x['per'])[:10]
|
|||
|
|
print(f"\n📊 Top-10配置:")
|
|||
|
|
for i, result in enumerate(sorted_results):
|
|||
|
|
tw = result['tta_weights']
|
|||
|
|
print(f"{i+1:2d}. PER={result['per']:6.3f}% | GRU={result['gru_weight']:.1f} | "
|
|||
|
|
f"TTA=({tw['noise']:.1f},{tw['scale']:.1f},{tw['shift']:.1f},{tw['smooth']:.1f})")
|
|||
|
|
else:
|
|||
|
|
print("❌ 未找到有效的配置结果！所有配置都失败了。")
|
|||
|
|
print("请检查缓存数据和评估逻辑。")
|
|||
|
|
|
|||
|
|
# 搜索统计
|
|||
|
|
valid_results = [r for r in all_results if 'error' not in r and r['per'] != float('inf')]
|
|||
|
|
print(f"\n📈 搜索统计:")
|
|||
|
|
print(f" 总配置数: {len(all_results)}")
|
|||
|
|
print(f" 成功配置数: {len(valid_results)}")
|
|||
|
|
print(f" 失败配置数: {len(all_results) - len(valid_results)}")
|
|||
|
|
|
|||
|
|
if valid_results:
|
|||
|
|
valid_pers = [r['per'] for r in valid_results]
|
|||
|
|
print(f" PER范围: {min(valid_pers):.3f}% - {max(valid_pers):.3f}%")
|
|||
|
|
print(f" 平均PER: {sum(valid_pers)/len(valid_pers):.3f}%")
|
|||
|
|
|
|||
|
|
if __name__ == "__main__":
|
|||
|
|
main()
|